Segments that are continued in later segments.
- Alien Abduction Reversal ends with Alien Abduction Reversal (Part 2).
- Barney Love, Barney Love (Part 2) and Barney Love (Part 3) get progressively weirder.
- Dicks With Time Machines, Dicks With Time Machines (Part 2) and Dicks With Time Machines (Part 3) are juxtaposed with Heroes With Time Machines (Part 4).
- Enter the Fat One is concluded in Enter the Fat One (Part 2).
- Horny Robot, Horny Robot (Part 2), Horny Robot (Part 3) and Horny Robot (Part 4) are practically the same. Horny Robot Callback and Horny Robot Redux come in a later episode.
- Hump Lightning and Humping Robot's Happy Ending.
- Star Trek Experience and I Took Out Rosie.
- Immature Pilots results in a Plane Crash.
- Jesus and the Argonauts is capped off with Jesus and the Argonauts (Part 2).
- Just Role Playing is concluded in Just Role Playing (Part 2).
- Lil' Hitler, Lil' Hitler (Part 2) and Lil' Hitler (Part 3) make up the evil triumvirate.
- Me & Seth Green is continued in Me & Stalin.
- Mission to Mars: Day 293 is followed by Mission to Mars: Day 312, Mission to Mars: Day 331 and Mission to Mars: Day 332.
- Cut Down in His Optimus Prime is briefly recapped in It Burns When I Pee.
- Sabrina the Teenage Bitch, Sabrina the Teenage Bitch (Part 2) and Sabrina the Teenage Bitch (Part 3) form the bitch triple play.
- Sailor Moon Confronted is followed by Queen Beryl is Mad then Anime Sure is Weird.
- Sam Leaps Into Paris poses a problem solved in Sam Leaps Into Paris (Part 2).
- Seacrest, Out! is followed up by Seacrest, Out! (Part 2) and Seacrest, Out! (Part 3).
- The Six Million Peso Man is finished off with The Six Million Peso Man (Part 2).
- Slapping Her Around makes way for Slapping Her Around Some More.
- You Can't Do That On Robot Chicken finishes in a season-ending cliffhanger resolved in Previously On Robot Chicken, marking the first time a segment has spanned two episodes (or seasons, for that matter).
- Similarly, the disaster of the Robot Chicken Telethon is witnessed by the guy who's Here For The Monkey, then made up for with Seth's Revenge.